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Wollastonite, 29Si (I=1/2)¶
29Si (I=1/2) spinning sideband simulation.
Wollastonite is a high-temperature calcium-silicate, \(\beta−\text{Ca}_3\text{Si}_3\text{O}_9\), with three distinct \(^{29}\text{Si}\) sites. The \(^{29}\text{Si}\) tensor parameters were obtained from Hansen et. al. 1
import matplotlib as mpl
import matplotlib.pyplot as plt
import mrsimulator.signal_processing as sp
import mrsimulator.signal_processing.apodization as apo
from mrsimulator import Simulator, SpinSystem, Site
from mrsimulator.methods import BlochDecaySpectrum
# global plot configuration
mpl.rcParams["figure.figsize"] = [4.5, 3.0]
Step 1: Create the sites.
S29_1 = Site(
isotope="29Si",
isotropic_chemical_shift=-89.0, # in ppm
shielding_symmetric={"zeta": 59.8, "eta": 0.62}, # zeta in ppm
)
S29_2 = Site(
isotope="29Si",
isotropic_chemical_shift=-89.5, # in ppm
shielding_symmetric={"zeta": 52.1, "eta": 0.68}, # zeta in ppm
)
S29_3 = Site(
isotope="29Si",
isotropic_chemical_shift=-87.8, # in ppm
shielding_symmetric={"zeta": 69.4, "eta": 0.60}, # zeta in ppm
)
sites = [S29_1, S29_2, S29_3] # all sites
Step 2: Create the spin systems from these sites. Again, we create three single-site spin systems for better performance.
spin_systems = [SpinSystem(sites=[s]) for s in sites]
Step 3: Create a Bloch decay spectrum method.
method = BlochDecaySpectrum(
channels=["29Si"],
magnetic_flux_density=14.1, # in T
rotor_frequency=1500, # in Hz
spectral_dimensions=[
{
"count": 2048,
"spectral_width": 25000, # in Hz
"reference_offset": -10000, # in Hz
"label": r"$^{29}$Si resonances",
}
],
)
Step 4: Create the Simulator object and add the method and spin system objects.
Step 5: Simulate the spectrum.
sim.run()
# The plot of the simulation before signal processing.
ax = plt.subplot(projection="csdm")
ax.plot(sim.methods[0].simulation.real, color="black", linewidth=1)
ax.invert_xaxis()
plt.tight_layout()
plt.show()
Step 6: Add post-simulation signal processing.
processor = sp.SignalProcessor(
operations=[sp.IFFT(), apo.Exponential(FWHM="70 Hz"), sp.FFT()]
)
processed_data = processor.apply_operations(data=sim.methods[0].simulation)
# The plot of the simulation after signal processing.
ax = plt.subplot(projection="csdm")
ax.plot(processed_data.real, color="black", linewidth=1)
ax.invert_xaxis()
plt.tight_layout()
plt.show()
- 1
Hansen, M. R., Jakobsen, H. J., Skibsted, J., \(^{29}\text{Si}\) Chemical Shift Anisotropies in Calcium Silicates from High-Field \(^{29}\text{Si}\) MAS NMR Spectroscopy, Inorg. Chem. 2003, 42, 7, 2368-2377. DOI: 10.1021/ic020647f
Total running time of the script: ( 0 minutes 1.045 seconds)